PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01431.70
Common NameJCGZ_21467, LOC105649571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 778aa    MW: 85813.1 Da    PI: 7.0619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01431.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08195214525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    +C+ffa+ G+C +G++C+F H
  Jcr4S01431.70 195 ICDFFAK-GWCIRGSSCRFLH 214
                    8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-4190216IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6190214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315190217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4195218IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6195214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MEFQGNDRQQ IQSCSPLGKS DLGIQSNSLV EDSFCNLKFS GSSNEQLTLR EESHVNDEDS  60
KCLKSREHLI AAGANGSQES VVKDDAHALM IKKNAKVMSE PHSDGKAHLC NSEDMAAETT  120
SSSSIVGHVS NAFATKDCSD MNANGILDSK VKPMEISSED GKERTTTRLV NSDIRTRSLS  180
FSAESKDQNK RPAVICDFFA KGWCIRGSSC RFLHIKSEAD NAKKQLEEDA TAAIFSKGDQ  240
FNEGLRNIME KSKLPDFPDL KATPNGNCAA ISCHFSSERI LALENGENRM LHQLEDEHKF  300
SSLKRKELSH DVNPDTQQFP SSKDDLGISS SLKDVGTENF RHNCTTTDYG SYTSLTNKYN  360
SPSFQNNFPP ENRASSSGSA VTSINYRGVN PSSYLSSLDN LRYIRDKYVN GSSFDGSFSS  420
SGMFPSHLIS AWTGPSFSFS SSLNTSPLGS QKLLDSDRDF RASRSSSLLH SASPLSGPER  480
ENLPMNIASR DPLNFAEHKA KVSSNDWEPS VPFRPSFFIT HTISSSPGSQ YDPLHDSIDL  540
PTAGYKIPFK FSFVSHRMPS LDTLHQPAHG NSSVSRSLGP EHNADKSTLS FHSRFHENVS  600
AKNCYTTGTD MLATGTVVGE TCVVDAQKGT TPNEENASST GERRDIPDMS KVDADHDSSP  660
RHQNDGPRHK KDSKVDKVKQ KREMVVDQKI EGESRAVRHF RAALVDFVKE LLKPTWREGH  720
LSKDAHNTIV KKAVEKVLST LQLHQIPTTM ESIKQYLSSS QPKIAKLVEG YCTKYGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091647.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A067JB110.0A0A067JB11_JATCU; Uncharacterized protein
STRINGPOPTR_0011s05550.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-37C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]